[Theory] Jar Jar Binks was a trained Force user, knowing Sith collaborator, and will play a central role in The Force Awakens

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However, GL chickened out. The fan reaction to Jar Jar was so vitriolic that this aspect of the trilogy was abandoned. Just too risky... if Jar Jar is truly that off-putting, it's potentially ruinous to the Star Wars legacy to imply that he's the ultimate bad guy of the entire saga. So pretend he was just a failed attempt at comic relief instead.
This is why Dooku seems like such a flat, shoehorned-in character with no backstory; he was hastily written in to cover the plot holes left when villain Jar Jar was redacted. Yoda was meant to duel with his literal darkside nemesis and mythological equivalent at the end of AotC: not boring old Count Dooku, but Sith Master Jar Jar.
Not bad.